Difference between revisions of "Metagenomics"
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| + | ==Comparison of species composition fro, shotgun metagnomic data== | ||
| + | <br /> | ||
| − | + | * Read classification (kraken-like): needs normalization by genome length to derive relative abundance | |
| + | * | ||
| − | |||
| + | === Tools === | ||
| − | == links == | + | ====mOTUs2==== |
| + | |||
| + | * Phylogenetic profiling based on universal markers | ||
| + | * Allow to classify genomes for which reference genomes are not available | ||
| + | * relative abundance | ||
| + | |||
| + | <br /> | ||
| + | |||
| + | ==== Bracken ==== | ||
| + | |||
| + | |||
| + | ==links== | ||
https://lemmi.ezlab.org | https://lemmi.ezlab.org | ||
Revision as of 09:23, 5 June 2019
Comparison of species composition fro, shotgun metagnomic data
- Read classification (kraken-like): needs normalization by genome length to derive relative abundance
Tools
mOTUs2
- Phylogenetic profiling based on universal markers
- Allow to classify genomes for which reference genomes are not available
- relative abundance