Difference between revisions of "Linux"
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* [https://jstaf.github.io/2018/03/25/atom-ide.html atom - ipython - Hydrogen package] | * [https://jstaf.github.io/2018/03/25/atom-ide.html atom - ipython - Hydrogen package] | ||
| + | |||
| + | |||
| + | == NextFlow == | ||
| + | |||
| + | === Relauch killed jobs with increased ressources === | ||
| + | |||
| + | |||
| + | <syntaxhighlight line='line'> | ||
| + | process foo { | ||
| + | |||
| + | memory { 2.GB * task.attempt } | ||
| + | time { 1.hour * task.attempt } | ||
| + | |||
| + | errorStrategy { task.exitStatus == 140 ? 'retry' : 'terminate' } | ||
| + | maxRetries 3 | ||
| + | |||
| + | script: | ||
| + | <your job here> | ||
| + | |||
| + | } | ||
| + | </syntaxhighlight> | ||
Revision as of 20:19, 13 November 2018
user/groups
create group and add users to the group
1sudo groupadd metagenlab
2
3# a: append
4# G: group
5sudo usermod -a -G <group> <user>
- group file conf
1cat /etc/group
HDD
- liste des disques
1lsblk -io KNAME,TYPE,SIZE,MODEL
utilisation des diques
1df -h
Docker
- ubuntu network access problem
1sudo mv /etc/resolv.conf{,.bak}
2sudo ln -s /etc/resolv.conf /run/systemd/resolve/resolv.conf
Atom setup
NextFlow
Relauch killed jobs with increased ressources
process foo {
memory { 2.GB * task.attempt }
time { 1.hour * task.attempt }
errorStrategy { task.exitStatus == 140 ? 'retry' : 'terminate' }
maxRetries 3
script:
<your job here>
}