Difference between revisions of "Bioinfo"
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# http://motu-tool.org/ | # http://motu-tool.org/ | ||
# https://www.ebi.ac.uk/metagenomics/ | # https://www.ebi.ac.uk/metagenomics/ | ||
| + | |||
| + | = Biblio = | ||
| + | |||
| + | # https://www.nature.com/articles/s41586-018-0703-0.epdf?shared_access_token=gm4GZr3P2ZZxDN8RGNy7LdRgN0jAjWel9jnR3ZoTv0N9OWpzII7VEgb2rgQ968D8MuuDkP3J2YZRratQgCRBTWXIBHcUKnD0HqETn9DHIBBPy5h4d7-POMKMRzGuhjJ8D3O4jLPrj4JrH7tG6gNQ6GQV77d_1eo568aMvymB-GU%3D | ||
| + | # https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6090853/ | ||
| + | # https://watermark.silverchair.com/msy123.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAkgwggJEBgkqhkiG9w0BBwagggI1MIICMQIBADCCAioGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMHUixy6gkLUA3-pjLAgEQgIIB-y5PdqIXTXk8tHL2nlaGIkx8nd-e6zdeifITsMs_WhG6Ri-iq0a_7w4lbB8DB8sTYrQefo0r0t5kda2AcRpaljP6V9pazbnx0nI_8qYqSUHlwazmGiXp2d01On_dz0CnsWnU3_9lBG8V8BWqxFLxtoDGcpDEi7QuEGOfNqXtvFLIzjDktbIORSiGSbpfqHo43UXby9IIDgnh8QmKoDm6zegZ_l2xVsPFJX1g_TvJToF9e0ORWuexNBGE5yMpKIN26aVse4BeS5lnrW-TXkLAvLh7eKNSMYznL4FK4gklCDFvDf6dAESrCgIEjbmBRGR5R6zTh3Ldw5PRHdLSquUXZ3sxqAGYZkFq2msd86fxaBqwE5UhJQHbNDsR1UD6CdfI7Dr12rCaqJgWyEHjwU9d-TNvZpu6buSBESQAgOjwEB7fWZc2MdyijGfD8dPYdkbsHYwiCjVxiSXXlIVehpRo8rNz9T9k7z38WYSLOjnELMRDl1NTerZyVRz2ixGQzLkXz7D0_iGvfgh6LIlvtYnfAQZmX1hBDfaxTjMbQwVJjvT8DS3dmXgYoc2J8sdEpi2dUwb6gt3XUbxbskvaYfDXo0JeQTPq5wftD54Iwp74VdYw5gHssdtFkbLLsh83ao2dtNDnlu0Uc2QB7gQ_TYRBmYPB3UzhkuTgaHOy0g | ||
| + | # https://research.pasteur.fr/fr/project/population-genomics/ | ||
| + | |||
| + | |||
| + | = Estimation du génome sur la base des kmer = | ||
| + | |||
| + | # http://kmergenie.bx.psu.edu/ | ||
| + | # https://khmer-recipes.readthedocs.io/en/latest/003-estimate-genome-size/index.html | ||
| + | # https://khmer-recipes.readthedocs.io/en/latest/005-estimate-total-genome-size/ | ||
| + | # https://khmer-recipes.readthedocs.io/en/latest/ | ||
| + | # http://koke.asrc.kanazawa-u.ac.jp/HOWTO/kmer-genomesize.html | ||
Revision as of 13:11, 19 November 2018
Tools
- https://github.com/snayfach/MIDAS
- https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump
- http://calcul.math.cnrs.fr/IMG/pdf/presentation.pdf
- https://github.com/gjospin/PhyloSift
- http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
- https://github.com/JoseBlanca/seq_crumbs
- https://github.com/soedinglab/MMseqs2/wiki#install-static-linux-version
- https://github.com/SaierLaboratory/BioVx/blob/master/scripts/gblast3.py
- https://ccb.jhu.edu/software/bracken/
- http://motu-tool.org/
- https://www.ebi.ac.uk/metagenomics/
Biblio
- https://www.nature.com/articles/s41586-018-0703-0.epdf?shared_access_token=gm4GZr3P2ZZxDN8RGNy7LdRgN0jAjWel9jnR3ZoTv0N9OWpzII7VEgb2rgQ968D8MuuDkP3J2YZRratQgCRBTWXIBHcUKnD0HqETn9DHIBBPy5h4d7-POMKMRzGuhjJ8D3O4jLPrj4JrH7tG6gNQ6GQV77d_1eo568aMvymB-GU%3D
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6090853/
- https://watermark.silverchair.com/msy123.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAkgwggJEBgkqhkiG9w0BBwagggI1MIICMQIBADCCAioGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMHUixy6gkLUA3-pjLAgEQgIIB-y5PdqIXTXk8tHL2nlaGIkx8nd-e6zdeifITsMs_WhG6Ri-iq0a_7w4lbB8DB8sTYrQefo0r0t5kda2AcRpaljP6V9pazbnx0nI_8qYqSUHlwazmGiXp2d01On_dz0CnsWnU3_9lBG8V8BWqxFLxtoDGcpDEi7QuEGOfNqXtvFLIzjDktbIORSiGSbpfqHo43UXby9IIDgnh8QmKoDm6zegZ_l2xVsPFJX1g_TvJToF9e0ORWuexNBGE5yMpKIN26aVse4BeS5lnrW-TXkLAvLh7eKNSMYznL4FK4gklCDFvDf6dAESrCgIEjbmBRGR5R6zTh3Ldw5PRHdLSquUXZ3sxqAGYZkFq2msd86fxaBqwE5UhJQHbNDsR1UD6CdfI7Dr12rCaqJgWyEHjwU9d-TNvZpu6buSBESQAgOjwEB7fWZc2MdyijGfD8dPYdkbsHYwiCjVxiSXXlIVehpRo8rNz9T9k7z38WYSLOjnELMRDl1NTerZyVRz2ixGQzLkXz7D0_iGvfgh6LIlvtYnfAQZmX1hBDfaxTjMbQwVJjvT8DS3dmXgYoc2J8sdEpi2dUwb6gt3XUbxbskvaYfDXo0JeQTPq5wftD54Iwp74VdYw5gHssdtFkbLLsh83ao2dtNDnlu0Uc2QB7gQ_TYRBmYPB3UzhkuTgaHOy0g
- https://research.pasteur.fr/fr/project/population-genomics/